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1c82d1716a
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Use CartesianIndices instead of handmade tuples
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2020-02-23 14:36:55 +01:00 |
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af6eae89dc
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Log total cost during optimisation
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2020-02-23 14:27:39 +01:00 |
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839bc8a1df
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Initialise the garden with the correct plant counts
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2020-02-23 11:23:02 +01:00 |
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21170b4007
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Compute costs between species and family
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2020-02-23 10:55:41 +01:00 |
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d0309486a4
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Avoid loading plants names two times
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2020-02-22 23:10:35 +01:00 |
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3a2ba93595
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Move MCMC tests to a separate file
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2020-02-22 23:10:35 +01:00 |
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2982cbf42c
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Fix garden output to CSV
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2020-02-22 18:33:00 +01:00 |
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2b4c21972d
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Fix test on Travis
`isnothing` requires at least Julia 1.1.
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2020-02-22 17:36:53 +01:00 |
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7eda1dc303
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Move MCMC code to its own source file
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2020-02-22 17:34:47 +01:00 |
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28a79fdd8e
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Update readme
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2020-02-22 17:32:04 +01:00 |
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fa6c02dc6c
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Add tests for classifications
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2020-02-22 17:28:47 +01:00 |
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6d30b54570
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Interpret correctly the signs in the affinity matrix
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2020-02-22 17:28:23 +01:00 |
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34d9cd000d
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Compute costs matrix from phylogenetic tree and reorganise sources
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2020-02-22 16:41:25 +01:00 |
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c117b9cccb
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Add phylogenetic tree and better cost computation
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2020-02-21 20:45:16 +01:00 |
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d3513c008a
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Add docstrings
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2020-02-20 22:10:46 +01:00 |
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bd97cffcc1
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Add type signatures to functions
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2020-02-20 21:47:45 +01:00 |
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0837a30169
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Adapt to true garden shape and constraints
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2020-02-20 21:24:42 +01:00 |
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62b7a97c5b
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Update data files
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2020-02-20 21:23:32 +01:00 |
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f0ae97dddb
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Add garden description
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2020-02-20 18:56:52 +01:00 |
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3bd21fd2db
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Compute the evolution of a random square garden
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2020-02-19 18:41:20 +01:00 |
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8b366f9457
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Add data
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2020-02-19 08:33:16 +01:00 |
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e38f0a10fd
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Fix README
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2020-02-18 22:47:48 +01:00 |
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e9e7f927ab
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Read costs matrix and preprocess it
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2020-02-18 22:43:37 +01:00 |
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f7f1db9246
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Add Metropolis-Hastings algorithm for Potts modelling
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2020-02-18 22:37:32 +01:00 |
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02281c49ee
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Files generated by PkgTemplates
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2020-02-18 19:00:36 +01:00 |
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d62999f46b
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Initial commit
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2020-02-18 19:00:31 +01:00 |
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