Commit graph

Select branches

Hide pull requests

master

mathprog

Mono Color

• 3527a0ad0b Switch to CPLEX solver mathprog Dimitri Lozeve 2020-02-25 21:24:00 +01:00
• fd5cffac9e Switch to MOSEK solver Dimitri Lozeve 2020-02-23 22:20:58 +01:00
• 43b7526497 Add constraints for fixed plants in garden Dimitri Lozeve 2020-02-23 22:20:10 +01:00
• fc1d2eb792 Fix constraint to allow empty cells Dimitri Lozeve 2020-02-23 22:18:10 +01:00
• c5c1391679 Use CartesianIndices instead of tuples Dimitri Lozeve 2020-02-23 14:39:12 +01:00
• 3a2dc40ce5 Define the problem as a mathematical programming model Dimitri Lozeve 2020-02-22 20:08:03 +01:00
• 1c82d1716a Use CartesianIndices instead of handmade tuples master Dimitri Lozeve 2020-02-23 14:36:55 +01:00
• af6eae89dc Log total cost during optimisation Dimitri Lozeve 2020-02-23 14:27:39 +01:00
• 839bc8a1df Initialise the garden with the correct plant counts Dimitri Lozeve 2020-02-23 11:23:02 +01:00
• 21170b4007 Compute costs between species and family Dimitri Lozeve 2020-02-23 10:55:41 +01:00
• d0309486a4 Avoid loading plants names two times Dimitri Lozeve 2020-02-22 20:29:15 +01:00
• 3a2ba93595 Move MCMC tests to a separate file Dimitri Lozeve 2020-02-22 20:08:03 +01:00
• 2982cbf42c Fix garden output to CSV Dimitri Lozeve 2020-02-22 18:33:00 +01:00
• 2b4c21972d Fix test on Travis Dimitri Lozeve 2020-02-22 17:36:53 +01:00
• 7eda1dc303 Move MCMC code to its own source file Dimitri Lozeve 2020-02-22 17:34:47 +01:00
• 28a79fdd8e Update readme Dimitri Lozeve 2020-02-22 17:32:04 +01:00
• fa6c02dc6c Add tests for classifications Dimitri Lozeve 2020-02-22 17:28:47 +01:00
• 6d30b54570 Interpret correctly the signs in the affinity matrix Dimitri Lozeve 2020-02-22 17:28:23 +01:00
• 34d9cd000d Compute costs matrix from phylogenetic tree and reorganise sources Dimitri Lozeve 2020-02-22 16:41:25 +01:00
• c117b9cccb Add phylogenetic tree and better cost computation Dimitri Lozeve 2020-02-21 20:45:16 +01:00
• d3513c008a Add docstrings Dimitri Lozeve 2020-02-20 22:10:46 +01:00
• bd97cffcc1 Add type signatures to functions Dimitri Lozeve 2020-02-20 21:47:45 +01:00
• 0837a30169 Adapt to true garden shape and constraints Dimitri Lozeve 2020-02-20 21:24:42 +01:00
• 62b7a97c5b Update data files Dimitri Lozeve 2020-02-20 21:23:32 +01:00
• f0ae97dddb Add garden description Dimitri Lozeve 2020-02-20 18:56:52 +01:00
• 3bd21fd2db Compute the evolution of a random square garden Dimitri Lozeve 2020-02-19 18:41:20 +01:00
• 8b366f9457 Add data Dimitri Lozeve 2020-02-19 08:33:16 +01:00
• e38f0a10fd Fix README Dimitri Lozeve 2020-02-18 22:47:48 +01:00
• e9e7f927ab Read costs matrix and preprocess it Dimitri Lozeve 2020-02-18 22:43:37 +01:00
• f7f1db9246 Add Metropolis-Hastings algorithm for Potts modelling Dimitri Lozeve 2020-02-18 22:37:32 +01:00
• 02281c49ee Files generated by PkgTemplates Dimitri Lozeve 2020-02-18 19:00:36 +01:00
• d62999f46b Initial commit Dimitri Lozeve 2020-02-18 19:00:31 +01:00