From 4b93f97120c5dc2d83c3fe7cea0b512353aa2952 Mon Sep 17 00:00:00 2001
From: Dimitri Lozeve <dimitri@lozeve.com>
Date: Mon, 6 Jan 2025 16:14:35 +0100
Subject: [PATCH 01/10] Add config for eat term

---
 init.el | 1 +
 1 file changed, 1 insertion(+)

diff --git a/init.el b/init.el
index e3fcc8c..75a8051 100644
--- a/init.el
+++ b/init.el
@@ -986,6 +986,7 @@
   (eat-update-semi-char-mode-map)
   (eat-reload)
   ;; Appearance
+  (setq eat-term-scrollback-size nil)
   (setq eat-enable-shell-prompt-annotation nil)
   (setopt eat-very-visible-cursor-type '(t nil nil))
   (setopt eat-default-cursor-type '(t nil nil))

From 9de39625c19b53630951d9f60eb7dc813cd3f6c6 Mon Sep 17 00:00:00 2001
From: Dimitri Lozeve <dimitri@lozeve.com>
Date: Mon, 6 Jan 2025 16:15:04 +0100
Subject: [PATCH 02/10] Replace pyenv with pet

---
 init.el | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/init.el b/init.el
index 75a8051..32ba07a 100644
--- a/init.el
+++ b/init.el
@@ -812,8 +812,10 @@
 (use-package rust-mode
   :ensure t)
 
-(use-package pyvenv
-  :ensure t)
+(use-package pet
+  :ensure t
+  :config
+  (add-hook 'python-base-mode-hook 'pet-mode -10))
 
 (use-package paredit
   :ensure t

From 9a9e76fe6a89b2b32309ba359f1cb9e110adfe2a Mon Sep 17 00:00:00 2001
From: Dimitri Lozeve <dimitri@lozeve.com>
Date: Tue, 14 Jan 2025 13:42:33 +0100
Subject: [PATCH 03/10] Add ultra-scroll

---
 init.el | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/init.el b/init.el
index 32ba07a..a0c96fe 100644
--- a/init.el
+++ b/init.el
@@ -194,6 +194,14 @@
   :ensure t
   :diminish visual-line-mode)
 
+(use-package ultra-scroll
+  :ensure (:host github :repo "jdtsmith/ultra-scroll" :branch "main")
+  :init
+  (setq scroll-conservatively 101	; important!
+        scroll-margin 0)
+  :config
+  (ultra-scroll-mode 1))
+
 ;;; Environment variables
 
 (use-package exec-path-from-shell

From f89667360385babe25efdd0342dfedb85c66096b Mon Sep 17 00:00:00 2001
From: Dimitri Lozeve <dimitri@lozeve.com>
Date: Tue, 14 Jan 2025 13:43:50 +0100
Subject: [PATCH 04/10] Deactivate yaml-ts-mode

---
 init.el | 1 -
 1 file changed, 1 deletion(-)

diff --git a/init.el b/init.el
index a0c96fe..a3bac28 100644
--- a/init.el
+++ b/init.el
@@ -731,7 +731,6 @@
 		     (python-mode . python-ts-mode)
 		     (rust-mode . rust-ts-mode)
 		     (toml-mode . toml-ts-mode)
-                     (yaml-mode . yaml-ts-mode)
 		     (css-mode . css-ts-mode)
 		     (typescript-mode . typescript-ts-mode)
 		     (js2-mode . js-ts-mode)))

From 224264663423a9c6cc636e6d2874882df8bb25ab Mon Sep 17 00:00:00 2001
From: Dimitri Lozeve <dimitri@lozeve.com>
Date: Tue, 14 Jan 2025 13:44:28 +0100
Subject: [PATCH 05/10] Add gptel

---
 init.el | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/init.el b/init.el
index a3bac28..b3531af 100644
--- a/init.el
+++ b/init.el
@@ -1019,6 +1019,8 @@
 	  (lambda () (when (file-exists-p custom-file)
 		       (load custom-file 'noerror))))
 
-(message "Successfully loaded entire config!")
+(use-package gptel
+  :ensure t)
 
+(message "Successfully loaded entire config!")
 ;;; init.el ends here

From ca3431b731552336af58e688600cd304eb834a8b Mon Sep 17 00:00:00 2001
From: Dimitri Lozeve <dimitri@lozeve.com>
Date: Sun, 26 Jan 2025 17:31:24 +0100
Subject: [PATCH 06/10] Update Elpaca installer version

---
 init.el | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/init.el b/init.el
index b3531af..64adc9d 100644
--- a/init.el
+++ b/init.el
@@ -8,7 +8,7 @@
 
 ;;; Elpaca setup
 
-(defvar elpaca-installer-version 0.8)
+(defvar elpaca-installer-version 0.9)
 (defvar elpaca-directory (expand-file-name "elpaca/" user-emacs-directory))
 (defvar elpaca-builds-directory (expand-file-name "builds/" elpaca-directory))
 (defvar elpaca-repos-directory (expand-file-name "repos/" elpaca-directory))

From 251dcdcc39f7addb197a49506e84fb26a580683a Mon Sep 17 00:00:00 2001
From: Dimitri Lozeve <dimitri@lozeve.com>
Date: Sun, 26 Jan 2025 17:35:42 +0100
Subject: [PATCH 07/10] Refactor with variable for notes directory

---
 init.el | 26 ++++++++++++++------------
 1 file changed, 14 insertions(+), 12 deletions(-)

diff --git a/init.el b/init.el
index 64adc9d..f9ec2f9 100644
--- a/init.el
+++ b/init.el
@@ -366,16 +366,18 @@
 ;;; Knowledge management: org-mode, org-roam, bibliography
 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
 
+(setq notes-dir "~/Documents/notes")
+
 ;; Pour accéder rapidement à l'organisation
 (defun gtd ()
   "Find the planner file."
   (interactive)
-  (find-file "~/notes/planner.org"))
+  (find-file (file-name-concat notes-dir "planner.org")))
 
 (defun bib ()
   "Find the bibliography file."
   (interactive)
-  (find-file "~/notes/bibliography/bibliography.bib")
+  (find-file (file-name-concat notes-dir "bibliography/bibliography.bib"))
   (end-of-buffer))
 
 (use-package org
@@ -384,8 +386,8 @@
 	 ("C-c a" . org-agenda)
 	 ("C-c c" . org-capture))
   :config
-  (setq org-agenda-files (list "~/notes/planner.org"))
-  (setq org-default-notes-file "~/notes/planner.org")
+  (setq org-agenda-files (list (file-name-concat notes-dir "planner.org")))
+  (setq org-default-notes-file (file-name-concat notes-dir "planner.org"))
   ;; List numbering with a. b. a) b), etc.
   (setq org-list-allow-alphabetical t)
   ;; Fontify code in code blocks
@@ -406,7 +408,7 @@
   (add-hook 'org-mode-hook #'visual-line-mode)
 
   ;; Set to the location of your Org files on your local system
-  (setq org-directory "~/notes")
+  (setq org-directory notes-dir)
 
   (setq org-agenda-block-separator ?─
 	org-agenda-time-grid '((daily today require-timed)
@@ -445,13 +447,13 @@
   (setq org-capture-templates
 	(quote
 	 (("t" "Task" entry
-	   (file+olp "~/notes/planner.org" "Inbox")
+	   (file+olp (file-name-concat notes-dir "planner.org") "Inbox")
 	   "** TODO %?")
 	  ("n" "Note" entry
-	   (file+olp "~/notes/planner.org" "Inbox")
+	   (file+olp (file-name-concat notes-dir "planner.org") "Inbox")
 	   "** %?")
 	  ("e" "Event" entry
-	   (file+olp "~/notes/planner.org" "Inbox")
+	   (file+olp (file-name-concat notes-dir "planner.org") "Inbox")
 	   "** %?\n%^T"))))
   (setq org-log-into-drawer t)
   (setq org-structure-template-alist
@@ -536,7 +538,7 @@
   :after (org)
   :config
   (setq org-pandoc-options '((standalone . t)
-			     (bibliography . "~/notes/bibliography/bibliography.bib"))))
+			     (bibliography . (file-name-concat notes-dir "bibliography/bibliography.bib")))))
 
 (use-package ox-gfm
   :ensure t
@@ -574,8 +576,8 @@
 (use-package citar
   :ensure t
   :custom
-  (org-cite-global-bibliography '("~/notes/bibliography/bibliography.bib"))
-  (org-cite-csl-styles-dir "~/notes/bibliography/")
+  (org-cite-global-bibliography `(,(file-name-concat notes-dir "bibliography/bibliography.bib")))
+  (org-cite-csl-styles-dir (file-name-concat notes-dir "bibliography/"))
   (org-cite-export-processors '((beamer . (biblatex))
 				(latex . (biblatex))
 				(t . (csl "chicago-author-date.csl"))))
@@ -641,7 +643,7 @@
   :ensure t
   :after org
   :custom
-  (org-roam-directory (file-truename "~/notes/notes"))
+  (org-roam-directory (file-truename (file-name-concat notes-dir "notes")))
   :bind (("C-c n l" . org-roam-buffer-toggle)
 	 ("C-c n f" . org-roam-node-find)
 	 ("C-c n g" . org-roam-graph)

From f62be5ee59b553ab1be33b9e7c237c867b8f8e06 Mon Sep 17 00:00:00 2001
From: Dimitri Lozeve <dimitri@lozeve.com>
Date: Fri, 7 Mar 2025 08:59:02 +0100
Subject: [PATCH 08/10] Remove forge and add git-link

---
 init.el | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/init.el b/init.el
index f9ec2f9..76c81fb 100644
--- a/init.el
+++ b/init.el
@@ -758,9 +758,11 @@
   :bind (("C-x g" . magit-status)
 	 ("C-x M-g" . magit-dispatch)))
 
-(use-package forge
+(use-package git-link
   :ensure t
-  :after magit)
+  :after transient
+  :config
+  (require 'git-link-transient))
 
 (use-package eglot
   :ensure nil

From b157c82f935aa375fad9bedeb1267218b4a670bc Mon Sep 17 00:00:00 2001
From: Dimitri Lozeve <dimitri@lozeve.com>
Date: Wed, 12 Mar 2025 20:26:57 +0100
Subject: [PATCH 09/10] Small config updates

---
 init.el | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/init.el b/init.el
index 76c81fb..9022ac6 100644
--- a/init.el
+++ b/init.el
@@ -8,7 +8,7 @@
 
 ;;; Elpaca setup
 
-(defvar elpaca-installer-version 0.9)
+(defvar elpaca-installer-version 0.10)
 (defvar elpaca-directory (expand-file-name "elpaca/" user-emacs-directory))
 (defvar elpaca-builds-directory (expand-file-name "builds/" elpaca-directory))
 (defvar elpaca-repos-directory (expand-file-name "repos/" elpaca-directory))
@@ -104,6 +104,7 @@
   (setq frame-resize-pixelwise t)
   (setq split-height-threshold 100)
   (setq view-read-only t)
+  (setq buffer-save-without-query t)
   ;; Newline at end of file
   (setq require-final-newline t)
   ;; TAB cycle if there are only few candidates
@@ -686,7 +687,7 @@
         org-roam-ui-open-on-start t))
 
 (defun dl/org-roam-rg-search ()
-  "Search org-roam directory using consult-ripgrep.  With live-preview."
+  "Search org-roam directory using 'consult-ripgrep'.  With live-preview."
   (interactive)
   (let ((consult-ripgrep-command "rg --null --ignore-case --type org --line-buffered --color=always --max-columns=500 --no-heading --line-number . -e ARG OPTS"))
     (consult-ripgrep org-roam-directory)))

From fb66ed604104d0b3235230631aecd884c9fdbc00 Mon Sep 17 00:00:00 2001
From: Dimitri Lozeve <dimitri@lozeve.com>
Date: Wed, 26 Mar 2025 09:56:21 +0100
Subject: [PATCH 10/10] Remove restclient

---
 init.el | 7 -------
 1 file changed, 7 deletions(-)

diff --git a/init.el b/init.el
index 9022ac6..52947a6 100644
--- a/init.el
+++ b/init.el
@@ -902,13 +902,6 @@
   :config
   (dirvish-override-dired-mode))
 
-(use-package restclient
-  :ensure t)
-
-(use-package ob-restclient
-  :ensure t
-  :after (org))
-
 (use-package pdf-tools
   :ensure t
   :load-path "site-lisp/pdf-tools/lisp"