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Initialise the garden with the correct plant counts

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This commit is contained in:
Dimitri Lozeve 2020-02-23 11:23:02 +01:00
parent 21170b4007
commit 839bc8a1df
3 changed files with 12 additions and 13 deletions
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1
Project.toml
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@ -9,6 +9,7 @@ DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
Logging = "56ddb016-857b-54e1-b83d-db4d58db5568" Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
Unicode = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" Unicode = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"

2
src/GardenOptim.jl
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@ -6,7 +6,7 @@ using DocStringExtensions
using Tables using Tables
export loadplants, loadgarden, loadclassification, loadcosts export loadplants, loadgarden, loadclassification, loadcosts
export update!, randomgardenevolution!, outputgarden export update!, fillgardenrandomly!, gardenevolution!, outputgarden
@template (FUNCTIONS, METHODS, MACROS) = @template (FUNCTIONS, METHODS, MACROS) =
""" """

22
src/mcmc.jl
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@ -1,4 +1,5 @@
using Logging using Logging
using Random
"Return a random index to be filled from the garden mask." "Return a random index to be filled from the garden mask."
function randomindex(mask::Matrix{Bool})::Int function randomindex(mask::Matrix{Bool})::Int
@ -66,21 +67,18 @@ function update!(
garden garden
end end
"Fill the garden randomly with a predefined number of plants." "Fill the garden randomly with a predefined number for each plant."
function randomfillgarden!(garden::Matrix{Int}, mask::Matrix{Bool}, plantcount::Int) function fillgardenrandomly!(garden::Matrix{Int}, mask::Matrix{Bool}, plants::DataFrame)
garden[mask] = rand(1:plantcount, sum(mask)) cells = vcat([repeat([plant], count) for (plant, count) in eachrow(plants)]...)
# fill the remaining slots with random plants
diffcount = sum(mask) - length(cells)
cells = vcat(cells, rand(cells, diffcount))
garden[mask] = shuffle!(indexin(cells, plants.name))
garden garden
end end
"Update the garden for a given number of steps, starting from a random initialisation." "Update the garden for a given number of steps."
function randomgardenevolution!( function gardenevolution!(garden::Matrix{Int}, mask::Matrix{Bool}, costs::Matrix{Float64}; steps::Int = 10000)
garden::Matrix{Int},
mask::Matrix{Bool},
costs::Matrix{Float64};
steps::Int = 10000
)
m = size(costs, 1)
garden = randomfillgarden!(garden, mask, m)
for i = 1:steps for i = 1:steps
update!(garden, mask, costs, 10.0) update!(garden, mask, costs, 10.0)
end end