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Compute costs between species and family

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This commit is contained in:
Dimitri Lozeve 2020-02-23 10:55:41 +01:00
parent d0309486a4
commit 21170b4007
1 changed files with 17 additions and 2 deletions
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19
src/loaddata.jl
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@ -50,7 +50,6 @@ function computecost(plant1::Symbol, plant2::Symbol, affinities_df::DataFrame, c
else else
affinity = missing affinity = missing
end end
if !ismissing(affinity) if !ismissing(affinity)
return -affinity return -affinity
end end
@ -60,11 +59,27 @@ function computecost(plant1::Symbol, plant2::Symbol, affinities_df::DataFrame, c
if isnothing(parent1) || isnothing(parent2) if isnothing(parent1) || isnothing(parent2)
return 0.0 return 0.0
end end
@debug "computecost($(parent1.name), $plant2)"
if parent1.name in names(affinities_df) && plant2 in names(affinities_df)
affinity = affinities_df[affinities_df.name .== parent1.name, plant2][1]
end
if !ismissing(affinity)
return -affinity
end
@debug "computecost($plant1, $(parent2.name))"
if plant1 in names(affinities_df) && parent2.name in names(affinities_df)
affinity = affinities_df[affinities_df.name .== plant1, parent2.name][1]
end
if !ismissing(affinity)
return -affinity
end
@debug "computecost($(parent1.name), $(parent2.name))" @debug "computecost($(parent1.name), $(parent2.name))"
if parent1.name in names(affinities_df) && parent2.name in names(affinities_df) if parent1.name in names(affinities_df) && parent2.name in names(affinities_df)
affinity = affinities_df[affinities_df.name .== parent1.name, parent2.name][1] affinity = affinities_df[affinities_df.name .== parent1.name, parent2.name][1]
end end
if !ismissing(affinity) if !ismissing(affinity)
return -affinity return -affinity
end end