Adapt to true garden shape and constraints

Project.toml

@@ -6,6 +6,7 @@ version = "0.1.0"
 [deps]
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
+Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
 
 [compat]
 julia = "1"

src/GardenOptim.jl

@@ -1,68 +1,120 @@
 module GardenOptim
 
-using CSV
 using Logging
+using CSV
+using Tables
 
-export update!
+export loadplants, loadgarden, loadcosts, update!, randomgardenevolution!, outputgarden
 
-function swap!(grid::Array{Int, 2}, i::Int, j::Int)
+function loadplants()
-    t = grid[i]
+    plants = readlines("data/plants.txt")
-    grid[i] = grid[j]
+    @info "loaded $(length(plants)) plants"
-    grid[j] = t
+    plants
-    grid
 end
 
-function neighbours(grid::Array{Int, 2}, idx)
+function loadgarden(plants)
-    m = size(grid, 1)
+    garden = CSV.read("data/garden.csv")
-    j, i = divrem(idx - 1, m)
+    garden = coalesce.(garden, "")
-    i += 1
+    mask = convert(Matrix, garden .== "empty")
-    j += 1
+    garden = indexin(convert(Matrix, garden), plants)
-    neighbourindices = [(i, j-1), (i, j+1), (i-1, j), (i+1, j)]
+    garden = replace(garden, nothing=>0)
-    [grid[k, l] for (k, l) in neighbourindices if 0 < k <= m && 0 < l <= m]
+    @assert size(garden) == size(mask)
-end
+    @info "loaded garden of size $(size(garden))"
-
+    garden, mask
-function deltacost(grid::Array{Int, 2}, costs::Array{Float64, 2}, i::Int, j::Int)
-    cost = 0
-    for k in neighbours(grid, i)
-        cost += costs[k, grid[j]] - costs[k, grid[i]]
-    end
-    for k in neighbours(grid, j)
-        cost += costs[k, grid[i]] - costs[k, grid[j]]
-    end
-    cost
-end
-
-function update!(grid::Array{Int, 2}, costs::Array{Float64, 2}, beta::Float64 = 10.0)
-    N = length(grid)
-    i, j = 0, 0
-    while i == j
-        i, j = rand(1:N, 2)
-    end
-    d = deltacost(grid, costs, i, j)
-    @debug "cost difference $d"
-    if rand() < exp(- beta * d)
-        @debug "swapping indices $i and $j"
-        return swap!(grid, i, j)
-    end
-    grid
 end
 
 function loadcosts()
     df = CSV.read("data/costs.csv")
     df = coalesce.(df, 0)  # replace missing values by 0
     costs = convert(Matrix, df[:, 2:end])
-    @debug "cost matrix of size $(size(costs))"
+    @info "loaded cost matrix of size $(size(costs))"
     # ensure the matrix is symmetric: keep the max of itself and its transpose
     costs = Float64.(max.(costs, permutedims(costs)))
 end
 
-function randomgridevolution(costs::Array{Float64, 2}, gardensize::Int = 50, steps::Int = 10000)
+function randomindex(mask::Matrix{Bool})
-    m = size(costs, 1)
+    while true
-    grid = rand(1:m, gardensize, gardensize)
+        i = rand(1:length(mask))
-    for i = 1:steps
+        if mask[i]
-        update!(grid, costs, 10.0)
+            return i
+        end
     end
-    grid
+end
+
+function swap!(garden::Matrix{Int}, i::Int, j::Int)
+    t = garden[i]
+    garden[i] = garden[j]
+    garden[j] = t
+    garden
+end
+
+function neighbours(garden::Matrix{Int}, idx)
+    m, n = size(garden)
+    j, i = divrem(idx - 1, m)
+    i += 1
+    j += 1
+    neighbourindices = [(i, j-1), (i, j+1), (i-1, j), (i+1, j)]
+    # cells filled with 0 are not part of the garden
+    [
+        garden[k, l] for (k, l) in neighbourindices
+        if 0 < k <= m && 0 < l <= n && garden[k, l] != 0
+    ]
+end
+
+function deltacost(garden::Matrix{Int}, costs::Matrix{Float64}, i::Int, j::Int)
+    cost = 0
+    for k in neighbours(garden, i)
+        cost += costs[k, garden[j]] - costs[k, garden[i]]
+    end
+    for k in neighbours(garden, j)
+        cost += costs[k, garden[i]] - costs[k, garden[j]]
+    end
+    cost
+end
+
+function update!(
+    garden::Matrix{Int},
+    mask::Matrix{Bool},
+    costs::Matrix{Float64},
+    beta::Float64 = 10.0
+)
+    N = length(garden)
+    i = randomindex(mask)
+    j = randomindex(mask)
+    while i == j
+        j = randomindex(mask)
+    end
+    d = deltacost(garden, costs, i, j)
+    @debug "cost difference $d"
+    if rand() < exp(- beta * d)
+        @debug "swapping indices $i and $j"
+        return swap!(garden, i, j)
+    end
+    garden
+end
+
+function randomfillgarden!(garden::Matrix{Int}, mask::Matrix{Bool}, plantcount::Int)
+    garden[mask] = rand(1:plantcount, sum(mask))
+    garden
+end
+
+function randomgardenevolution!(
+    garden::Matrix{Int},
+    mask::Matrix{Bool},
+    costs::Matrix{Float64};
+    steps::Int = 10000
+)
+    m = size(costs, 1)
+    garden = randomfillgarden!(garden, mask, m)
+    for i = 1:steps
+        update!(garden, mask, costs, 10.0)
+    end
+    garden
+end
+
+function outputgarden(garden::Matrix{Int}, plants::Vector{String})
+    output = vcat([""], plants)[garden .+ 1]
+    CSV.write("output.csv", Tables.table(output), writeheader=false)
 end
 
 end # module

test/runtests.jl

@@ -2,6 +2,10 @@ using GardenOptim
 using Test
 
 @testset "GardenOptim.jl" begin
+    @testset "randomindex" begin
+        mask = rand(Bool, 5, 5)
+        @test mask[GardenOptim.randomindex(mask)]
+    end
     @testset "swap" begin
         grid = ones(Int, 5, 5)
         grid[2] = 5
@@ -18,6 +22,8 @@ using Test
         @test length(GardenOptim.neighbours(grid, 8)) == 4
         @test length(GardenOptim.neighbours(grid, 25)) == 2
         @test GardenOptim.neighbours(grid, 1) == [1, 1]
+        grid[3] = 0
+        @test length(GardenOptim.neighbours(grid, 4)) == 2
     end
     @testset "deltacost" begin
         grid = ones(Int, 5, 5)